FQHC & Healthcare Nonprofit Audit

    FQHC & Ryan White Healthcare Nonprofit Audit — DC, Maryland & Virginia

    What audit requirements apply to Federally Qualified Health Centers?

    FQHCs receiving HRSA Health Center Program grants (ALN 93.224) must complete a Single Audit when federal awards exceed $1,000,000 (raised from $750,000 effective for fiscal years beginning on or after October 1, 2024), as required by 2 CFR Part 200. HRSA also requires annual financial data submission through the Uniform Data System (UDS). The audit must reconcile UDS financial data to audited financial statements, and must cover Health Center Program compliance requirements.

    Healthcare Nonprofit Audit Challenges We Solve

    "Our HRSA audit found our UDS data doesn't reconcile to our audited financials"

    The Uniform Data System (UDS) annual report is HRSA's primary performance and financial monitoring tool. Auditors are required to reconcile UDS financial data to the audited financial statements. Discrepancies are a significant finding.

    "We received COVID-19 Provider Relief Funds (PRF) and don't know our audit obligations"

    Provider Relief Funds (ALN 93.498) are federal awards subject to Single Audit when combined with other federal awards to reach $1M. HHS also requires separate PRF Reporting Portal submissions — and the audit tests compliance with both.

    "Our Ryan White Part A grant has compliance requirements we've never been tested on"

    Ryan White programs (ALN 93.914 through 93.918) have specific compliance requirements including client eligibility determination, service documentation, and income assessment. These are tested separately from the health center program requirements.

    "We're a look-alike FQHC — are our audit requirements the same as Section 330 grantees?"

    FQHC Look-Alikes are approved by HRSA but do not receive Section 330 grants. They do not receive federal grant funds directly from HRSA, so they are generally not subject to Single Audit from the FQHC designation alone. However, they may receive other federal grants (Ryan White, Medicaid wrap-around) that trigger Single Audit.

    "SAMHSA behavioral health grants added to our federal portfolio and pushed us over $1M"

    Behavioral health grants from SAMHSA (Substance Abuse and Mental Health Services Administration) are federal awards counted toward the Single Audit threshold. Organizations that add SAMHSA funding often cross $1M for the first time without realizing it.

    Receive HRSA or Ryan White funding? Let's review your audit requirements.

    We'll review your federal award portfolio, UDS reconciliation needs, and major program status — then provide a fixed-fee audit quote.

    Key Healthcare Nonprofit Definitions

    Federally Qualified Health Center (FQHC)
    A community-based health care provider designated by HRSA that receives Health Center Program grants (Section 330 of the Public Health Service Act). FQHCs provide comprehensive primary care services regardless of ability to pay, and receive enhanced Medicaid and Medicare reimbursement rates. All Section 330 grantees are subject to HRSA Health Center Program requirements, including annual UDS reporting and financial reporting.
    Uniform Data System (UDS)
    HRSA's annual reporting system for Health Center Program grantees and look-alikes. The UDS collects clinical, operational, and financial data on each health center. Financial data in the UDS must reconcile to the center's audited financial statements, and discrepancies between UDS and audit data are a specific finding area.

    Healthcare Nonprofit Federal Programs — Audit Requirements

    FeatureProgramALN NumberKey Compliance Area
    Health Center Program (Section 330)93.224UDS reconciliation, sliding fee scale, governance
    Ryan White Part A (Emergency)93.914Client eligibility, service documentation, income assessment
    Ryan White Part B (ADAP)93.917ADAP eligibility, formulary compliance, reporting
    Ryan White Part C (Early Intervention)93.918Clinical quality management, core services
    Provider Relief Funds (COVID-19)93.498PRF reporting, allowable costs, lost revenue calculation
    SAMHSA Behavioral Health93.243Evidence-based practice, client eligibility, data reporting
    Maternal & Child Health93.994Priority needs assessment, service delivery, reporting

    Our FQHC & Healthcare Audit Process

    1

    Federal Award Portfolio Review

    We inventory all federal grants and identify ALN numbers, total expenditures, and major program determination for your FQHC or healthcare nonprofit portfolio.

    2

    UDS Reconciliation

    We prepare or review the reconciliation of your UDS financial data to your audited financial statements as required by HRSA. This is a critical pre-audit step.

    3

    Healthcare Program Compliance Testing

    We test compliance with Health Center Program requirements (Section 330 grantees), Ryan White program requirements (each Part separately), and any other major healthcare federal programs.

    4

    Reporting & HRSA Submission

    We issue the complete Single Audit report package and assist with HRSA-required submissions, including UDS reconciliation documentation.

    Serving DC/MD/VA Healthcare Nonprofits

    DC has the highest concentration of FQHCs per capita in the DMV, including Unity Health Care, Mary's Center, Whitman-Walker Health, and others. DC also has significant Ryan White Part A funding through the DC HIV/AIDS Administration. Maryland FQHCs include Community Clinic Inc., Chase Brexton, and others receiving HRSA and Ryan White funding. Virginia community health centers include HealthWorks for Northern Virginia and many rural health clinics receiving federal designation.

    Frequently Asked Questions

    FQHC & Healthcare Nonprofit Audit Experts in DC/MD/VA

    Fixed-fee Single Audit services with deep expertise in HRSA, Ryan White, SAMHSA, and HHS compliance requirements. UDS reconciliation included.